PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G108600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 485aa    MW: 51442.5 Da    PI: 8.2357
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G108600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.36.7e-80754731374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                         l +lLl+ + a ++gd ++a+a+L ++  +as  g dp  R+aayf+ ALa+rl+r      + +++s+ +     e++ a+++f+++sP+
  Sevir.7G108600.1.p  75 LMHLLLTSVAAGEAGDVHAATAALHEVYRRASFGGgDPAPRVAAYFADALASRLLR------SPVAASPPT---RGEQFLAYTMFYQASPL 156
                         5799****************************9999********************......555555555...7888999********** PP

                GRAS  91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....eg.............ppslRiTgvgspesgskeeleetg 162
                         ++f+h+taNqaI+ea+e+   +r+H++Dfd+s+G+QWp+L+q+L++ +    +g             p slRiTg+g     s++el++t+
  Sevir.7G108600.1.p 157 YQFAHFTANQAIVEAFERGgrRRLHVVDFDVSYGFQWPSLIQSLSDAAvtstSGgshdgdgdgdskePVSLRITGLGT----SADELRQTE 243
                         ****************9876699**********************888655511678888889998677*********....9******** PP

                GRAS 163 erLakfAeel.gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.ns 250
                          rL++fA+ + +v+fef+ +v    + l+ + ++ +  + +++Vnl++   r+   ++s+++     L  v+sl+P +v +ve+  +  n+
  Sevir.7G108600.1.p 244 ARLTRFASGCpNVRFEFEGVVNGPSSGLHERIIKNDGdDATVVVNLAFPAARTS--PTSTRE-ACGDLARVRSLNPSLVFLVERGGSSsNG 331
                         *******98769*******88889999988888888856678999999988886..444444.5677*****************9777455 PP

                GRAS 251 e.....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac......egaerrerhetlekWrerleeaGFkpvpls 330
                         +     s+l  f+ +l+y++a+fdsl++ lp++s er  +Er +lg ei+n+v+        g +++++  + + W++++e+aGF+ v+ls
  Sevir.7G108600.1.p 332 TprgrsSLLPPFTASLRYFAAVFDSLHECLPADSAERLAIERNYLGVEISNAVSSldrshgGGGDHTAEPSSSACWKDMMESAGFQGVALS 422
                         4677779**********************************************97322222455689999999****************** PP

                GRAS 331 ekaakqaklllrkvk.sdg....yrveee.sgslv.lgWkdrpLvsvSaWr 374
                         +++++qaklll++ +   g    +rv e   g ++ lgW+d +L++++aWr
  Sevir.7G108600.1.p 423 SRTVSQAKLLLKMKSgCAGsgggFRVIEGdGGRAMsLGWRDSALITTTAWR 473
                         ***********9976544444569987661444446**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.63849446IPR005202Transcription factor GRAS
PfamPF035142.3E-7775473IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MNLTLSLAIN GGTSTGTGKK RKVRDSVVID DVGDGGDRSR VLRILQARER MMARLEVDDP  60
RVAHDDGGGS GGLRLMHLLL TSVAAGEAGD VHAATAALHE VYRRASFGGG DPAPRVAAYF  120
ADALASRLLR SPVAASPPTR GEQFLAYTMF YQASPLYQFA HFTANQAIVE AFERGGRRRL  180
HVVDFDVSYG FQWPSLIQSL SDAAVTSTSG GSHDGDGDGD SKEPVSLRIT GLGTSADELR  240
QTEARLTRFA SGCPNVRFEF EGVVNGPSSG LHERIIKNDG DDATVVVNLA FPAARTSPTS  300
TREACGDLAR VRSLNPSLVF LVERGGSSSN GTPRGRSSLL PPFTASLRYF AAVFDSLHEC  360
LPADSAERLA IERNYLGVEI SNAVSSLDRS HGGGGDHTAE PSSSACWKDM MESAGFQGVA  420
LSSRTVSQAK LLLKMKSGCA GSGGGFRVIE GDGGRAMSLG WRDSALITTT AWRRRRRSID  480
KTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-36804738375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975641.10.0PREDICTED: DELLA protein DWARF8-like
TrEMBLK3Y6Y10.0K3Y6Y1_SETIT; Uncharacterized protein
STRINGSi009972m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-48RGA-like 2